Table 3 Summary of the reads and mapping results
From: NOD-like receptors mediate inflammatory lung injury during plateau hypoxia exposure
Sample | 0–1 days | 0–2 days | 0–3 days | 0-day mean | 28–1 day | 28–2 days | 28–3 days | 28-day mean |
|---|---|---|---|---|---|---|---|---|
Total raw reads (M) | 39.91 | 44.84 | 42.63 | 42.46 | 61.40 | 57.87 | 55.32 | 58.20 |
Total clean reads (M) | 39.22 | 43.79 | 41.72 | 41.58 | 59.69 | 56.06 | 53.75 | 56.50 |
Total clean bases (Gb) | 5.88 | 6.57 | 6.26 | 6.24 | 8.95 | 8.41 | 8.06 | 8.47 |
Clean reads Q20 (%) | 97.91 | 97.75 | 96.72 | 97.46 | 97.35 | 97.79 | 97.31 | 97.48 |
Clean reads Q30 (%) | 94.19 | 93.86 | 91.69 | 93.25 | 92.82 | 93.82 | 92.77 | 93.14 |
Clean reads ratio (%) | 98.28 | 97.65 | 97.85 | 97.93 | 97.22 | 96.88 | 97.16 | 97.09 |
Total mapping (%) | 93.10 | 92.94 | 92.37 | 92.80 | 95.05 | 94.34 | 94.7 | 94.70 |
Multiple mapping (%) | 4.6 | 4.91 | 4.51 | 4.67 | 5.6 | 5.98 | 5.56 | 5.71 |
Unique mapping (%) | 88.51 | 88.04 | 87.86 | 88.14 | 89.44 | 88.37 | 89.14 | 88.98 |
GC (%) | 48.66 | 49.18 | 48.75 | 48.86 | 50.36 | 50.54 | 50.14 | 50.35 |