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Table 1 Tested genes

From: An adaptive variant of TRIB2, rs1057001, is associated with higher expression levels of thermogenic genes in human subcutaneous and visceral adipose tissues

Symbol

Gene name

Function

Assay type and nucleotide sequences of primersa

CIDEA

Cell death-inducing DFFA-like effector A

Development of brown/beige adipocytes

5ā€²-CAGCTCGCCCTTTCCGGGTC

5ā€²-CGAGGGCATCCAGAGTCTTGCT

DIO2

Iodothyronine deiodinase 2

Thermogenesis

5ā€²-AGAGGGACTGCGCTGCGTCT

5ā€²-TGCACCACACTGGAATTGGGGG

PDRM16

PR/SET domain 16

Development of brown/beige adipocytes

5ā€²-GAACCAGGCATATGCAATGATGCTG

5ā€²-CCAGCCCGTCAGAGGTGGTTG

PPARGC1A

PPARG coactivator 1 alpha

Development of brown/beige adipocytes

5ā€²-AGACACCGCACGCACCGAAAT

5ā€²-AGCTGTCATACCTGGGCCGACG

UCP1

Uncoupling protein 1

Thermogenesis

5ā€²-CGGCCTCTACGACACGGTCCA

5ā€²-ACGACCTCTGTGGGTTGCCCAA

ACC

Acetyl-CoA carboxylase

Fatty acid synthesis

TaqMan

DGAT1

Diacylglycerol O-acyltransferase 1

Triglyceride synthesis

5ā€²-GCCCCCAACAAGGACGGAGAC

5ā€²-CCACACACCAGTTCAGGATGCCA

FASN

Fatty acid synthase

Fatty acid synthesis

TaqMan

SCD1

Stearoyl-CoA desaturase 1

Fatty acid synthesis

TaqMan

SREBP1

Sterol regulatory element-binding protein1

Master regulator of fatty acid synthesis

TaqMan

ADIPOQ

Adiponectin

Adipocytokine

TaqMan

FABP4

Fatty acid-binding protein 4

Incorporation of fatty acids

5ā€²-TGGGGGTGTCCTGGTACATGTGC

5ā€²-ACGCCTTTCATGACGCATTCCACC

ADRB3

Adrenoceptor beta 3

Lipolysis

TaqMan

GLUT4

Facilitated glucose transporter, member 4

Incorporation of glucose

5ā€²-TTGGCCCTGGCCCCATTCCT

5ā€²-GCCCCATAGCCTCCGCAACA

LEP

Leptin

Adipocytokine

5ā€²-TAGGAATCGCAGCGCCAGCGG

5ā€²-ATCCGCACAGGGTTCCCCAATG

  1. aPrimer sequences are shown for genes quantified by RT-PCRĀ with SYBR Green